STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP15029.1FKBP-type peptidyl-prolyl cis-trans isomerase. (174 aa)    
Predicted Functional Partners:
GAP13088.1
Peptidyl-prolyl cis-trans isomerase.
  
 0.973
GAP15030.1
Parvulin-like peptidyl-prolyl isomerase.
      0.950
GAP14805.1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.932
GAP15027.1
Single-strand binding protein.
  
 
  0.771
GAP13450.1
Protein containg FOG: WD40-like repeat.
   
 
 0.732
GAP14607.1
Serine/threonine protein kinase.
   
 
 0.732
GAP14290.1
Hypothetical protein.
   
 
 0.664
GAP15157.1
Protein containg FOG: WD40-like repeat.
   
 
 0.664
rpsR
SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
    0.612
GAP14025.1
Hypothetical protein.
    
 
 0.589
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.