STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP15044.1Nucleoside-diphosphate-sugar epimerase. (306 aa)    
Predicted Functional Partners:
GAP13444.1
Acyl carrier protein.
   
 0.999
GAP13702.1
NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein.
   
 0.999
GAP13703.1
NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit.
   
 0.999
GAP14297.1
NAD-dependent formate dehydrogenase iron-sulfur protein.
   
 0.999
GAP14298.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
   
 0.999
GAP14318.1
NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit.
   
 0.999
GAP14319.1
NAD(P)-dependent nickel-iron dehydrogenase diaphorase component subunit HoxU.
   
 0.999
GAP14352.1
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit.
  
 0.999
nuoB
NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
   
 0.999
nuoD
NADH:ubiquinone oxidoreductase 49 kD subunit 7; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
   
 0.999
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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