STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP15088.1Gas vesicle protein. (120 aa)    
Predicted Functional Partners:
GAP15087.1
Hypothetical protein.
       0.695
GAP14391.1
CARDB domain-containing protein.
  
     0.611
GAP14740.1
Predicted NTPase.
  
     0.603
GAP13772.1
Capsule polysaccharide biosynthesis protein.
  
    0.544
GAP14908.1
Protein containg FOG: GAF domain.
  
    0.522
GAP13789.1
Capsule polysaccharide biosynthesis protein.
  
    0.521
GAP14767.1
Protein containg TPR repeat.
  
     0.520
GAP14078.1
Histidine kinase.
  
     0.510
GAP14416.1
4-amino-4-deoxy-L-arabinose transferase.
  
     0.491
GAP14639.1
Uncharacterized protein conserved in bacteria.
  
     0.470
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.