STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP15220.1Uncharacterized protein, putative amidase. (226 aa)    
Predicted Functional Partners:
GAP13471.1
Glycosyltransferase.
 
  
 0.665
GAP12451.1
Glycosyltransferase.
  
  
 0.607
GAP13478.1
Glycosyltransferase.
  
  
 0.607
GAP13791.1
Glycosyltransferase.
  
  
 0.607
GAP14500.1
Glycosyltransferase.
  
  
 0.607
GAP15208.1
Glycosyltransferase.
  
  
 0.607
GAP15794.1
Glycosyltransferase.
  
  
 0.607
GAP13145.1
Sugar phosphate isomerase/epimerase.
 
 
  0.559
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.541
GAP14137.1
Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
 
  
  0.497
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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