STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP15228.1PAP2 superfamily. (330 aa)    
Predicted Functional Partners:
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.975
GAP13445.1
acyl-CoA synthetase.
    
 0.971
GAP16096.1
acyl-CoA synthetase.
    
 0.971
GAP14231.1
Glycerophosphoryl diester phosphodiesterase.
 
 0.859
GAP14809.1
Sterol desaturase.
    
 0.733
GAP15227.1
YtxH-like protein.
       0.696
GAP16133.1
Superfamily II DNA/RNA helicase, SNF2 family.
    
   0.682
dinG
Exonuclease, DNA polymerase III, epsilon subunit family; 3'-5' exonuclease.
  
   0.678
GAP14900.1
Hypothetical protein.
    
  0.658
GAP14749.1
Dolichol kinase.
 
 
 0.654
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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