STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP15255.1Uncharacterized protein, LmbE homolog. (302 aa)    
Predicted Functional Partners:
GAP15254.1
Predicted membrane protein.
       0.773
GAP15400.1
Conserved hypothetical protein.
  
     0.754
GAP15399.1
Conserved hypothetical protein.
  
     0.751
GAP15137.1
ABC-2 family transporter protein/Integral membrane protein DUF95.
  
     0.663
GAP15256.1
Dinucleotide-utilizing enzyme.
       0.652
GAP14308.1
Glycosyltransferase.
  
 
  0.606
GAP15257.1
tRNA nucleotidyltransferase/poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
  
 0.587
GAP13747.1
N-acetylglucosamine 6-phosphate deacetylase.
     
 0.504
GAP15053.1
Predicted membrane protein.
  
     0.492
GAP13746.1
Predicted N-acetylglucosamine kinase.
    
  0.465
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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