GAP15256.1 protein (Longilinea arvoryzae) - STRING interaction network

Nodes:

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second shell of interactors

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a 3D structure is known or predicted

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

GAP15256.1

Dinucleotide-utilizing enzyme. (384 aa)

Predicted Functional Partners:

GAP14224.1

0.999

GAP15034.1

0.999

GAP15816.1

0.999

GAP14647.1

0.998

GAP12596.1

0.994

GAP13104.1

0.993

GAP13970.1

0.992

GAP14347.1

0.992

GAP15862.1

0.992

truA

0.986

Your Current Organism:

Longilinea arvoryzae

NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GAP12596.1	GAP14224.1	LARV_00332	LARV_01990	Molybdopterin synthase subunit MoaD.	Sulfur transfer protein.	0.533
GAP12596.1	GAP14647.1	LARV_00332	LARV_02421	Molybdopterin synthase subunit MoaD.	Cysteine sulfinate desulfinase/cysteine desulfurase.	0.542
GAP12596.1	GAP15034.1	LARV_00332	LARV_02814	Molybdopterin synthase subunit MoaD.	Molybdopterin synthase subunit MoaE.	0.994
GAP12596.1	GAP15256.1	LARV_00332	LARV_03040	Molybdopterin synthase subunit MoaD.	Dinucleotide-utilizing enzyme.	0.994
GAP12596.1	GAP15816.1	LARV_00332	LARV_03609	Molybdopterin synthase subunit MoaD.	Sulfur transfer protein.	0.994
GAP13104.1	GAP14224.1	LARV_00846	LARV_01990	Molybdopterin synthase subunit MoaD.	Sulfur transfer protein.	0.533
GAP13104.1	GAP14347.1	LARV_00846	LARV_02115	Molybdopterin synthase subunit MoaD.	MoaD family protein, archaeal.	0.681
GAP13104.1	GAP14647.1	LARV_00846	LARV_02421	Molybdopterin synthase subunit MoaD.	Cysteine sulfinate desulfinase/cysteine desulfurase.	0.542
GAP13104.1	GAP15034.1	LARV_00846	LARV_02814	Molybdopterin synthase subunit MoaD.	Molybdopterin synthase subunit MoaE.	0.997
GAP13104.1	GAP15256.1	LARV_00846	LARV_03040	Molybdopterin synthase subunit MoaD.	Dinucleotide-utilizing enzyme.	0.993
GAP13104.1	GAP15816.1	LARV_00846	LARV_03609	Molybdopterin synthase subunit MoaD.	Sulfur transfer protein.	0.994
GAP13970.1	GAP14224.1	LARV_01729	LARV_01990	Molybdopterin converting factor, small subunit.	Sulfur transfer protein.	0.533
GAP13970.1	GAP14647.1	LARV_01729	LARV_02421	Molybdopterin converting factor, small subunit.	Cysteine sulfinate desulfinase/cysteine desulfurase.	0.542
GAP13970.1	GAP15034.1	LARV_01729	LARV_02814	Molybdopterin converting factor, small subunit.	Molybdopterin synthase subunit MoaE.	0.994
GAP13970.1	GAP15256.1	LARV_01729	LARV_03040	Molybdopterin converting factor, small subunit.	Dinucleotide-utilizing enzyme.	0.992
GAP13970.1	GAP15816.1	LARV_01729	LARV_03609	Molybdopterin converting factor, small subunit.	Sulfur transfer protein.	0.994
GAP14224.1	GAP12596.1	LARV_01990	LARV_00332	Sulfur transfer protein.	Molybdopterin synthase subunit MoaD.	0.533
GAP14224.1	GAP13104.1	LARV_01990	LARV_00846	Sulfur transfer protein.	Molybdopterin synthase subunit MoaD.	0.533
GAP14224.1	GAP13970.1	LARV_01990	LARV_01729	Sulfur transfer protein.	Molybdopterin converting factor, small subunit.	0.533
GAP14224.1	GAP14347.1	LARV_01990	LARV_02115	Sulfur transfer protein.	MoaD family protein, archaeal.	0.533

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

34

average node degree:

6.18

avg. local clustering coefficient:

0.915

expected number of edges:

10

PPI enrichment p-value:

2.83e-09

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0051382

Kinetochore assembly

3 of 12

2.72

1.93

0.00029

GO:0007059

Chromosome segregation

5 of 220

1.68

1.59

0.00029

GO:0000712

Resolution of meiotic recombination intermediates

2 of 17

2.4

0.87

0.0257

GO:0036297

Interstrand cross-link repair

2 of 25

2.23

0.81

0.0327

GO:0031297

Replication fork processing

2 of 29

2.16

0.78

0.0359

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0080122

AMP transmembrane transporter activity

2 of 4

3.02

1.16

0.0082

GO:0015228

Coenzyme A transmembrane transporter activity

2 of 4

3.02

1.16

0.0082

GO:0043262

Adenosine-diphosphatase activity

2 of 7

2.78

1.15

0.0082

GO:0015217

ADP transmembrane transporter activity

2 of 9

2.67

1.15

0.0082

GO:0005347

ATP transmembrane transporter activity

2 of 16

2.42

1.01

0.0140

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000775

Chromosome, centromeric region

5 of 150

1.85

2.32

7.01e-06

GO:0071821

FANCM-MHF complex

2 of 5

2.93

1.58

0.0014

GO:0043240

Fanconi anaemia nuclear complex

2 of 9

2.67

1.4

0.0028

GO:0000776

Kinetochore

3 of 101

1.8

1.24

0.0030

GO:0005694

Chromosome

6 of 900

1.15

1.03

0.00057

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4083

Centromere complex assembly, and AMP transport

7 of 16

2.97

8.07

5.63e-16

CL:4087

Centromere complex assembly, and Inner kinetochore

6 of 11

3.06

7.34

2.20e-14

CL:4090

Centromere complex assembly, and Inner kinetochore

3 of 6

3.02

3.0

3.36e-06

CL:2471

Fanconi anaemia nuclear complex, and CENP-S protein

2 of 12

2.55

1.13

0.0085

CL:2198

DNA replication, and Fanconi anemia pathway

3 of 165

1.58

0.8

0.0229

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

sdu03460

Fanconi anemia pathway

2 of 46

1.96

0.76

0.0376

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-774815

Nucleosome assembly

5 of 62

2.23

3.39

1.30e-07

MAP-606279

Deposition of new CENPA-containing nucleosomes at the centromere

5 of 62

2.23

3.39

1.30e-07

MAP-73886

Chromosome Maintenance

5 of 129

1.91

2.64

1.47e-06

MAP-499943

Interconversion of nucleotide di- and triphosphates

3 of 43

2.17

1.72

0.00049

MAP-141444

Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal

3 of 108

1.77

1.11

0.0057

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0071821

FANCM-MHF complex

2 of 5

2.93

1.44

0.0025

GOCC:0000779

Condensed chromosome, centromeric region

3 of 48

2.12

1.36

0.0025

GOCC:0000776

Kinetochore

3 of 54

2.07

1.35

0.0025

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