STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP15443.1Bacterial extracellular solute-binding proteins, family 5 Middle. (546 aa)    
Predicted Functional Partners:
GAP15802.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.900
GAP15801.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
  0.890
GAP13004.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.889
GAP13686.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.869
GAP14177.1
ABC-type oligopeptide transport system, periplasmic component.
 
 
 0.840
GAP12290.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.837
GAP13005.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
  0.831
GAP12819.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
  
  
 0.826
GAP13736.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.824
GAP12289.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
  0.788
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.