STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP15444.1Large extracellular alpha-helical protein. (1974 aa)    
Predicted Functional Partners:
GAP14291.1
V8-like Glu-specific endopeptidase.
    
 0.998
GAP15648.1
Protein containg conserved repeat domain.
    
 0.929
GAP12638.1
Protein containing SET domain.
    
  0.923
GAP14050.1
Protein containing SET domain.
    
  0.923
GAP14313.1
Protein containing SET domain.
    
  0.923
GAP12710.1
Esterase/lipase.
  
 
  0.887
GAP15788.1
Esterase/lipase.
   
 
  0.872
nrdR
Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
    
   0.833
GAP15373.1
Hypothetical protein.
     
 0.788
GAP15593.1
Small GTP-binding protein.
  
     0.653
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.