Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
GAP15644.1Arabinose efflux permease. (424 aa)    
Predicted Functional Partners:
GAP15643.1
Raf kinase inhibitor-like protein, YbhB/YbcL family.
 
     0.812
GAP15332.1
Acetyltransferase (GNAT) family.
  
     0.628
GAP14140.1
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.613
GAP15641.1
Predicted pyridoxal phosphate-dependent enzyme; Belongs to the DegT/DnrJ/EryC1 family.
       0.603
GAP15642.1
Protein containg bacterial PH domain.
       0.603
GAP14054.1
Fe-S-cluster-containing hydrogenase components 1.
     
 0.596
GAP12876.1
Hypothetical protein.
  
     0.583
GAP12333.1
Serine/threonine protein kinase.
 
     0.548
GAP14295.1
DNA-binding transcriptional activator of the SARP family.
  
     0.534
GAP14303.1
ABC-type uncharacterized transport system, permease component.
  
     0.513
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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