Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAP15648.1Protein containg conserved repeat domain. (863 aa)    
Predicted Functional Partners:
GAP15649.1
Hypothetical protein.
     
 0.734
GAP14291.1
V8-like Glu-specific endopeptidase.
    
 
 0.726
GAP14991.1
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.
  
     0.685
GAP15650.1
Flp pilus assembly protein TadG.
       0.657
rpsE
SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
  0.632
rpsP
SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.
     
  0.608
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
     
  0.608
rpsI
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
     
  0.608
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.602
GAP15373.1
Hypothetical protein.
  
 
  0.599
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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