Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAP15679.1Uncharacterized conserved protein. (56 aa)    
Predicted Functional Partners:
GAP14561.1
Protein containg HD-GYP domain.
    
  0.794
GAP14917.1
Protein containg HD-GYP domain.
    
  0.794
GAP15592.1
Protein containg PAS domain S-box.
    
  0.794
GAP14816.1
Signal transduction histidine kinase.
    
  0.778
GAP15230.1
Protein containg PAS domain S-box.
     
  0.774
GAP15647.1
Signal transduction histidine kinase.
    
  0.752
GAP12564.1
Protein containg PAS domain S-box.
    
  0.658
GAP15113.1
Histidine kinase.
    
  0.658
GAP15165.1
Zinc-binding alcohol dehydrogenase family protein.
    
  0.636
GAP14910.1
Histidine kinase.
    
  0.635
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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