Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAP15684.1Protein containg VTC domain. (286 aa)    
Predicted Functional Partners:
GAP15683.1
Hypothetical protein.
 
     0.956
GAP15685.1
Hypothetical protein.
 
     0.870
GAP15681.1
Signal transduction histidine kinase.
 
     0.664
GAP15682.1
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.580
GAP15780.1
Transcriptional regulator.
 
   
 0.524
GAP16125.1
Hypothetical protein.
  
     0.517
GAP12425.1
LPXTG-site transpeptidase.
  
     0.458
GAP15100.1
Predicted membrane protein.
  
     0.408
GAP12500.1
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component.
  
     0.404
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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