STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP15711.1Calx-beta domain/Carboxypeptidase regulatory-like domain/Right handed beta helix region. (1833 aa)    
Predicted Functional Partners:
GAP13617.1
Protein containg RHS repeat-associated core domain.
  
 
  0.586
GAP12613.1
Hypothetical protein.
    
 0.573
GAP16105.1
Protein containg RHS repeat-associated core domain.
  
 
  0.514
GAP12570.1
Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
     
 0.492
GAP16062.1
Protein containg RHS repeat-associated core domain.
  
 
  0.491
GAP16064.1
Protein containg RHS repeat-associated core domain.
  
 
  0.491
GAP16103.1
Protein containg RHS repeat-associated core domain.
  
 
  0.491
GAP16092.1
Hypothetical protein.
  
 
  0.476
GAP14118.1
Uncharacterized protein conserved in bacteria.
    
 0.473
GAP12605.1
Protein containg conserved repeat domain/CSLREA domain.
  
  
  0.450
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.