STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP15715.1ATP-dependent transcriptional regulator. (947 aa)    
Predicted Functional Partners:
GAP15714.1
Arabinose efflux permease.
       0.566
GAP14613.1
Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.
    
   0.539
GAP14728.1
Molecular chaperone; Belongs to the small heat shock protein (HSP20) family.
    
   0.539
GAP15466.1
Molecular chaperone; Belongs to the small heat shock protein (HSP20) family.
    
   0.539
GAP15829.1
Two component transcriptional regulator, LuxR family.
  
  
  0.435
GAP15716.1
Hypothetical protein.
       0.409
GAP14793.1
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
  
  0.405
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.