STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP16144.1Short-chain dehydrogenase of various substrate specificities. (279 aa)    
Predicted Functional Partners:
GAP15606.1
Polyketide synthase module.
  
 0.922
GAP16143.1
Short-chain dehydrogenase of various substrate specificities.
 
  0.920
GAP14439.1
Glycine cleavage system T protein; Belongs to the GcvT family.
    
 0.839
GAP14149.1
Glutamate formiminotransferase.
    
 0.819
GAP13555.1
Short-chain dehydrogenase of various substrate specificities; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  0.809
GAP13795.1
Dehydrogenase.
  
  0.767
GAP14976.1
Dehydrogenase.
  
  0.739
GAP15196.1
Dehydrogenase.
  
  0.735
GAP14590.1
Dehydrogenase.
  
  0.721
GAP13584.1
Dehydrogenase.
  
  0.719
Your Current Organism:
Longilinea arvoryzae
NCBI taxonomy Id: 360412
Other names: JCM 13670, KTCC 5380, L. arvoryzae, Longilinea arvoryzae Yamada et al. 2007, anaerobic filamentous bacterium KOME-1, strain KOME-1
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