STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
blaI_1Regulatory protein BlaI. (119 aa)    
Predicted Functional Partners:
mecI
Methicillin resistance regulatory protein mecI.
  
  
  0.936
blaR1_1
Regulatory protein BlaR1.
 
 
 0.933
blaR1_2
Regulatory protein BlaR1.
 
 
 0.932
mecR1
Methicillin resistance mecR1 protein.
 
  
  0.777
copA_1
Copper-exporting P-type ATPase A.
  
  
 0.647
zntA
Lead%2C cadmium%2C zinc and mercury-transporting ATPase.
 
  
 0.580
CUO30528.1
Copper chaperone.
  
  
 0.511
blaI_3
Regulatory protein BlaI.
  
  
 
0.497
CUN99693.1
Uncharacterised protein.
 
  
  0.470
blaI_2
Regulatory protein BlaI.
  
  
  0.456
Your Current Organism:
Roseburia inulinivorans
NCBI taxonomy Id: 360807
Other names: DSM 16841, NCIMB 14030, R. inulinivorans, Roseburia inulinivorans Duncan et al. 2006, butyrate-producing bacterium A2-194, butyrate-producing bacterium L1-83, strain A2-194
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.