STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmpD_1Bicarbonate transport ATP-binding protein CmpD. (272 aa)    
Predicted Functional Partners:
ssuC_1
Putative aliphatic sulfonates transport permease protein ssuC.
 
 
 0.997
tauA
Sulfate starvation-induced protein 1.
 
 
 0.985
ssuA
Putative aliphatic sulfonates-binding protein precursor.
 
 
 0.958
lptB_3
Lipopolysaccharide export system ATP-binding protein LptB.
 
   
 
0.915
ybhF_4
Uncharacterized ABC transporter ATP-binding protein YbhF.
 
  
 
0.913
ssuC_2
Putative aliphatic sulfonates transport permease protein ssuC.
 
 
 0.891
CUO15934.1
ABC-type taurine transport system%2C periplasmic component.
  
 
 0.832
modB
Molybdenum transport system permease protein modB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
   
 0.700
zraS_2
Sensor protein ZraS.
 
     0.634
nagB_1
Glucosamine-6-phosphate deaminase.
 
     0.598
Your Current Organism:
Roseburia inulinivorans
NCBI taxonomy Id: 360807
Other names: DSM 16841, NCIMB 14030, R. inulinivorans, Roseburia inulinivorans Duncan et al. 2006, butyrate-producing bacterium A2-194, butyrate-producing bacterium L1-83, strain A2-194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.