STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN72611.1methylmalonyl-CoA epimerase. (127 aa)    
Predicted Functional Partners:
porA
Pyruvate synthase subunit porA.
    
 0.953
trpB
Tryptophan synthase beta chain.
   
  0.911
CUO14978.1
Hydroxyacylglutathione hydrolase.
    
 0.908
tdcB
L-threonine dehydratase catabolic TdcB.
   
 0.907
baeB
Probable polyketide biosynthesis zinc-dependent hydrolase BaeB.
    
 0.846
CUN34977.1
Ferredoxin.
  
 
 0.792
ppaC
Manganese-dependent inorganic pyrophosphatase.
    
 0.790
petC1
Cytochrome b6-f complex iron-sulfur subunit 1.
  
 
 0.698
calB
Coniferyl aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.563
birA
Bifunctional protein BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.555
Your Current Organism:
Roseburia inulinivorans
NCBI taxonomy Id: 360807
Other names: DSM 16841, NCIMB 14030, R. inulinivorans, Roseburia inulinivorans Duncan et al. 2006, butyrate-producing bacterium A2-194, butyrate-producing bacterium L1-83, strain A2-194
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