STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spsESpore coat polysaccharide biosynthesis protein spsE. (329 aa)    
Predicted Functional Partners:
neuA
N-acylneuraminate cytidylyltransferase.
 
 0.995
neuC
Polysialic acid biosynthesis protein P7.
 
 
 0.987
CUN75686.1
Uncharacterized protein conserved in bacteria.
 
  
 0.920
rfbF_2
Glucose-1-phosphate cytidylyltransferase.
 
  
 0.904
strE
dTDP-glucose 4%2C6-dehydratase.
 
  
 0.880
wecB
UDP-N-acetylglucosamine 2-epimerase.
  
 
 0.847
btrR_2
L-glutamine:2-deoxy-scyllo-inosose aminotransferase.
 
  
 0.783
CUN75575.1
Uncharacterised protein.
       0.773
fliN
Flagellar motor switch protein FliN.
  
  
 0.699
CUO52481.1
Transferase 2%2C rSAM/selenodomain-associated.
  
  
 0.693
Your Current Organism:
Roseburia inulinivorans
NCBI taxonomy Id: 360807
Other names: DSM 16841, NCIMB 14030, R. inulinivorans, Roseburia inulinivorans Duncan et al. 2006, butyrate-producing bacterium A2-194, butyrate-producing bacterium L1-83, strain A2-194
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