STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN80585.1Radical SAM family uncharacterized protein. (622 aa)    
Predicted Functional Partners:
CUN80622.1
Uncharacterized protein conserved in bacteria.
    0.988
rne
Ribonuclease E.
 
     0.867
CUN63893.1
polyphosphate:AMP phosphotransferase.
   
    0.659
CUN80553.1
Uncharacterised protein.
       0.634
CUN80788.1
Predicted ribosomal protein.
  
    0.590
hisE
Phosphoribosyl-ATP pyrophosphatase; In the C-terminal section; belongs to the PRA-PH family.
       0.580
CUN80524.1
Uncharacterized protein conserved in bacteria.
       0.502
CUN87276.1
Prenyltransferase.
   
 
 0.483
hisB
Histidine biosynthesis bifunctional protein hisB.
       0.462
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
     0.453
Your Current Organism:
Roseburia inulinivorans
NCBI taxonomy Id: 360807
Other names: DSM 16841, NCIMB 14030, R. inulinivorans, Roseburia inulinivorans Duncan et al. 2006, butyrate-producing bacterium A2-194, butyrate-producing bacterium L1-83, strain A2-194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.