STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxB_2Thioredoxin reductase. (411 aa)    
Predicted Functional Partners:
CUN98023.1
Uncharacterized protein with conserved CXXC pairs.
    0.976
lhgO_2
L-2-hydroxyglutarate oxidase LhgO.
 
 0.976
lhgO_1
L-2-hydroxyglutarate oxidase LhgO.
 
 0.948
CUN71964.1
Uncharacterized protein with conserved CXXC pairs.
    0.922
trxA-2
Thioredoxin C-1; Belongs to the thioredoxin family.
  
 0.909
trxA
Thioredoxin; Belongs to the thioredoxin family.
  
 0.909
CUO27729.1
NADH oxidase.
  
 0.904
CUN65154.1
PUA domain (predicted RNA-binding domain).
  
 
 0.870
tlpA
Cytochrome c biogenesis protein tlpA.
   
 0.857
gltD_1
Glutamate synthase [NADPH] small chain.
  
 
  0.810
Your Current Organism:
Roseburia inulinivorans
NCBI taxonomy Id: 360807
Other names: DSM 16841, NCIMB 14030, R. inulinivorans, Roseburia inulinivorans Duncan et al. 2006, butyrate-producing bacterium A2-194, butyrate-producing bacterium L1-83, strain A2-194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.