STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO05119.1Antitoxin HipB. (80 aa)    
Predicted Functional Partners:
CUO28969.1
Phage-related protein.
 
     0.802
CUO49656.1
Phage-related protein.
 
     0.768
CUO05092.1
Uncharacterised protein.
       0.743
CUO32794.1
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.731
CUO49636.1
DNA-binding transcriptional repressor PuuR.
  
     0.628
CUN77950.1
Uncharacterized protein related to capsule biosynthesis enzymes.
 
 
 
 0.603
CUN77913.1
Putative DNA-binding transcriptional regulator.
   
 
 0.546
Your Current Organism:
Roseburia inulinivorans
NCBI taxonomy Id: 360807
Other names: DSM 16841, NCIMB 14030, R. inulinivorans, Roseburia inulinivorans Duncan et al. 2006, butyrate-producing bacterium A2-194, butyrate-producing bacterium L1-83, strain A2-194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.