STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfG_4Cyclic di-GMP phosphodiesterase response regulator RpfG. (274 aa)    
Predicted Functional Partners:
adrA
Probable diguanylate cyclase AdrA.
 
 0.829
gmr_3
Cyclic di-GMP phosphodiesterase Gmr.
 0.823
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
 0.818
cph2_5
Bacteriophytochrome cph2.
 
  
 0.793
dosP_2
Oxygen sensor protein DosP.
 
 0.791
CUO15329.1
Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
  
     0.772
gmr_5
Cyclic di-GMP phosphodiesterase Gmr.
  
 
  0.769
ycdT
Probable diguanylate cyclase YcdT.
  
 
  0.768
cph2_4
Bacteriophytochrome cph2.
 
 0.764
pleD_2
Stalked cell differentiation-controlling protein.
  
  
  0.737
Your Current Organism:
Roseburia inulinivorans
NCBI taxonomy Id: 360807
Other names: DSM 16841, NCIMB 14030, R. inulinivorans, Roseburia inulinivorans Duncan et al. 2006, butyrate-producing bacterium A2-194, butyrate-producing bacterium L1-83, strain A2-194
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.