STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cycB_3Cyclodextrin-binding protein precursor. (433 aa)    
Predicted Functional Partners:
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
  
 0.967
ycjP_6
Inner membrane ABC transporter permease protein ycjP.
 
  0.958
ugpA_4
Sn-glycerol-3-phosphate transport system permease protein ugpA.
 
  0.916
CUO19440.1
Uncharacterized proteins%2C LmbE homologs.
 
     0.866
ycjP_13
Inner membrane ABC transporter permease protein ycjP.
 
  0.854
ycjP_8
Inner membrane ABC transporter permease protein ycjP.
  
  0.834
ycjP_12
Inner membrane ABC transporter permease protein ycjP.
  
  0.834
ycjP_14
Inner membrane ABC transporter permease protein ycjP.
  
  0.834
lipO_3
Lipoprotein lplA.
  
  
 
0.819
yehU_3
Probable sensor-like histidine kinase YehU.
 
     0.738
Your Current Organism:
Roseburia inulinivorans
NCBI taxonomy Id: 360807
Other names: DSM 16841, NCIMB 14030, R. inulinivorans, Roseburia inulinivorans Duncan et al. 2006, butyrate-producing bacterium A2-194, butyrate-producing bacterium L1-83, strain A2-194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.