STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO24452.1Flavodoxin. (143 aa)    
Predicted Functional Partners:
CUO24479.1
Protein of uncharacterised function (DUF3793).
 
     0.925
CUO24421.1
Uncharacterized protein conserved in bacteria (DUF2325).
 
     0.810
dfx
Superoxide reductase.
 
  
 0.759
cph2_5
Bacteriophytochrome cph2.
  
 
 0.707
CUN89502.1
McHr.
  
  
 0.577
dosP_2
Oxygen sensor protein DosP.
    
  0.508
CUO41613.1
PAS domain S-box protein.
    
  0.495
porA
Pyruvate synthase subunit porA.
  
    0.480
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
    
 0.460
CUO39540.1
Transcriptional regulator FixK.
  
    0.425
Your Current Organism:
Roseburia inulinivorans
NCBI taxonomy Id: 360807
Other names: DSM 16841, NCIMB 14030, R. inulinivorans, Roseburia inulinivorans Duncan et al. 2006, butyrate-producing bacterium A2-194, butyrate-producing bacterium L1-83, strain A2-194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.