STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolD_4Lipoprotein-releasing system ATP-binding protein LolD. (127 aa)    
Predicted Functional Partners:
CUN41359.1
Acidobacterial duplicated orphan permease.
  
 0.972
CUO54137.1
Acidobacterial duplicated orphan permease.
  
 0.972
CUO28848.1
FtsX-like permease family.
  
 0.888
cmpD_2
Bicarbonate transport ATP-binding protein CmpD.
  
     0.758
CUO31606.1
Putative multidrug export ATP-binding/permease protein SAV1866.
  
     0.752
msbA_4
Lipid A export ATP-binding/permease protein MsbA.
  
     0.752
ybhF_4
Uncharacterized ABC transporter ATP-binding protein YbhF.
  
     0.736
ecfA2
Energy-coupling factor transporter ATP-binding protein EcfA2; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
  
  0.722
ecfA1
Energy-coupling factor transporter ATP-binding protein EcfA1; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
  
  0.675
CUO21037.1
Acidobacterial duplicated orphan permease.
  
  0.641
Your Current Organism:
Roseburia inulinivorans
NCBI taxonomy Id: 360807
Other names: DSM 16841, NCIMB 14030, R. inulinivorans, Roseburia inulinivorans Duncan et al. 2006, butyrate-producing bacterium A2-194, butyrate-producing bacterium L1-83, strain A2-194
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