STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO49261.1Relaxase/Mobilisation nuclease domain. (471 aa)    
Predicted Functional Partners:
CUO49231.1
Uncharacterised protein.
 
     0.942
topB_2
DNA topoisomerase 3.
 
 
   0.854
CUO48455.1
Uncharacterised protein.
 
     0.760
CUO48717.1
Uncharacterised protein.
 
     0.752
CUO49211.1
Uncharacterised protein.
       0.748
CUO48403.1
Conjugal transfer coupling protein TraG.
 
   
 0.738
CUN60945.1
Bacterial mobilisation protein (MobC).
 
     0.716
CUN57850.1
Bacterial mobilisation protein (MobC).
 
     0.714
CUO55583.1
Uncharacterised protein.
 
    0.700
CUO48427.1
Maff2 family.
  
     0.692
Your Current Organism:
Roseburia inulinivorans
NCBI taxonomy Id: 360807
Other names: DSM 16841, NCIMB 14030, R. inulinivorans, Roseburia inulinivorans Duncan et al. 2006, butyrate-producing bacterium A2-194, butyrate-producing bacterium L1-83, strain A2-194
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.