STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A077Z512Collagen alpha (Iv) chain. (1784 aa)    
Predicted Functional Partners:
A0A077Z7M3
Muscle M line assembly protein unc 89.
   
 0.858
A0A077Z0D0
Muscle M line assembly protein unc 89.
    
 0.850
A0A077Z8U9
Integrin beta; Belongs to the integrin beta chain family.
    
 0.830
A0A077YZN4
Protein EMB 9, a.
  
  
 
0.784
A0A077ZFQ7
Leucine rich repeat serine:threonine protein.
    
 0.718
A0A077YZG6
Integrin beta.
    
 0.712
A0A077YYY5
Procollagen lysine,2 oxoglutarate 5 dioxygenase.
   
 0.674
A0A077ZB12
VAB 10A protein.
   
 0.671
A0A077YY83
Metalloendopeptidase.
    
 0.645
A0A077ZDK5
WD40 domain containing protein.
    
 0.622
Your Current Organism:
Trichuris trichiura
NCBI taxonomy Id: 36087
Other names: T. trichiura, human whipworm
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.