STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A077ZDS0Putative universal minicircle sequence binding pr otein (UMSBP). (196 aa)    
Predicted Functional Partners:
A0A077Z4A7
Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
  0.713
A0A077YW10
Small nuclear ribonucleoprotein G.
    
  0.711
A0A077YWF0
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.
   
  0.709
A0A077ZGZ0
Small nuclear ribonucleoprotein Sm D3.
   
 0.681
A0A077YVS5
Heterogeneous nuclear ribonucleoprotein L.
    
 0.680
A0A077Z1B1
RRM 1 and DND1 DSRM domain containing protein.
    
 0.680
A0A077Z4F6
Heterogeneous nuclear ribonucleoprotein Q.
    
 0.680
A0A077Z8E7
Symplekin C and DUF3453 domain containing protein.
    
 0.676
A0A077Z780
RRM 1 domain containing protein.
  
 0.655
A0A077ZIY6
U1 small nuclear ribonucleoprotein 70 kDa.
  
 0.655
Your Current Organism:
Trichuris trichiura
NCBI taxonomy Id: 36087
Other names: T. trichiura, human whipworm
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