STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV0039Putative exported protein. (329 aa)    
Predicted Functional Partners:
BAV0885
Putative membrane protein.
 
  
 0.850
BAV1862
Putative membrane protein.
 
  
 0.850
BAV0037
Putative exported protein.
 
    
0.771
BAV0038
Putative reductase.
       0.705
BAV2901
Putative membrane protein.
 
  
 0.666
BAV1861
Putative membrane protein.
 
  
 0.654
BAV0040
Probable short-chain dehydrogenase/reductase.
       0.561
BAV0036
Putative dioxygenase.
       0.508
BAV0041
IclR-family transcriptional regulator; Start codon not provided.
       0.476
BAV0035
Putative dioxygenase; Weakly similar to Rhodococcus globerulus biphenyl-2,3-diol 1,2-dioxygenase ii bphc2 SWALL:BHC2_RHOGO (SWALL:P47232).
       0.410
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.