STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0076Putative transcriptional regulator. (357 aa)    
Predicted Functional Partners:
fhaB
Filamentous hemagglutinin/adhesin.
 
     0.737
BAV0856
Adhesin.
  
   
 0.734
BAV2527
Partial CDS. Similar to the Bordetellae putative lipoprotein BB1831/BPP2381/BP2001.
  
     0.712
BAV2531
Putative type IV pilus assembly protein (pseudogene); Unassigned protein domain.
  
     0.707
BAV2114
Hypothetical protein; Start codon not provided; No significant database matches.
  
   
 0.697
BAV1572
Phage integrase (pseudogene); Unassigned protein domain.
  
     0.688
BAV1795
Conserved hypotheticalprotein.
  
     0.682
BAV0900
Putative adhesin; Start codon not provided.
  
   
 0.675
BAV1551
Putative filamentous hemagglutinin/adhesin; Similar to fhaS and fhaL of B. bronchiseptica. It is also located at the same position as B. bronchiseptica fhaS.
 
     0.660
BAV2972
Hypothetical protein; No significant database matches.
  
   
 0.660
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.