STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0086Putative glycosyl transferase. (316 aa)    
Predicted Functional Partners:
BAV0088
Putative lipopolysaccharide biosynthesis protein.
 
  
 0.679
BAV0089
Putative lipid A biosynthesis protein.
 
  
 0.655
BAV0087
Putative lipopolysaccharide biosynthesis protein.
  
    0.556
BAV2636
Capsular polysaccharide biosynthesis glucosyltransferase.
  
  
 0.514
BAV3086
Putative O-antigen export ABC transporter,ATP-binding protein.
 
  
 0.495
wlbH
Putative glycosyl transferase.
 
  
 0.493
BAV0084
Putative lipopolysaccharide biosynthesis protein.
  
  
 0.482
wlbJK
Putative membrane protein.
  
 
 0.437
BAV0085
Putative lipopolysaccharide biosynthesis protein.
       0.422
BAV0082
Putative lipopolysaccharide biosynthesis protein; Start codon not provided.
       0.417
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.