STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BAV0087Putative lipopolysaccharide biosynthesis protein. (647 aa)    
Predicted Functional Partners:
glmS
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
 
  
  0.917
glnA
Glutamine synthetase.
  
  
  0.911
carB
Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.
   
 
 0.906
gltD
Glutamate synthase [NADPH] small chain.
    
  0.902
glsA
Glutaminase; Belongs to the glutaminase family.
    
  0.901
gltB
Glutamate synthase [NADPH] large chain precursor.
    
  0.901
carA
Carbamoyl-phosphate synthase small chain; Start codon not provided.
     
  0.900
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
     
  0.900
BAV0081
Putative O-antigen translocase.
 
    0.828
BAV0088
Putative lipopolysaccharide biosynthesis protein.
 
     0.811
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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