STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wlbBProbable acetyltransferase. (189 aa)    
Predicted Functional Partners:
wlbC
Lipopolysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family.
 
 0.996
wlbA
Probable oxidoreductase.
 
  
 0.954
wlbE
Probable glycosyl transferase.
 
  
 0.924
wlbF
Lipopolysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.827
BAV0081
Putative O-antigen translocase.
 
  
 0.810
cysM
Cysteine synthase B; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 
 0.802
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.775
BAV0089
Putative lipid A biosynthesis protein.
 
  
 0.668
wlbJK
Putative membrane protein.
  
  
 0.639
BAV3077
Putative exopolysaccharide biosynthesis aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.627
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.