STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wlbAProbable oxidoreductase. (348 aa)    
Predicted Functional Partners:
wlbC
Lipopolysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.995
wlbB
Probable acetyltransferase.
 
  
 0.954
wbpO
Polysaccharide biosynthesis protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
 
 0.944
wlbE
Probable glycosyl transferase.
 
  
 0.938
wbpP
UDP-N-acetylglucosamine C4 epimerase.
  
 
 0.909
wlbL
Putative sugar epimerase/dehydratase.
 
   
 0.872
wlbF
Lipopolysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.845
lysS
lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.818
wlbJK
Putative membrane protein.
   
 
 0.608
BAV0081
Putative O-antigen translocase.
 
  
 0.547
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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