STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0101Putative solute-binding periplasmic component of ABC transporter. (363 aa)    
Predicted Functional Partners:
BAV0102
ABC transporter, solute-binding protein.
 
 
 0.987
BAV0103
Probable ABC-transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.971
BAV1923
ABC transporter, substrate-binding protein.
     
 0.903
BAV0924
ABC transporter, permease.
 
 
 0.902
BAV1193
ABC transporter, periplasmic binding protein.
     
 0.901
BAV1924
ABC transporter, permease protein.
  
 
 0.880
BAV1191
ABC transporter permease protein.
  
 
 0.874
BAV0923
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.840
BAV1190
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.840
BAV1925
ABC transporter, ATP-binding protein; Start codon not provided.
  
 
 0.840
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.