STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV0103Probable ABC-transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (355 aa)    
Predicted Functional Partners:
BAV0102
ABC transporter, solute-binding protein.
 
 0.992
BAV0101
Putative solute-binding periplasmic component of ABC transporter.
 
 
 0.971
BAV0924
ABC transporter, permease.
 
 0.942
BAV1924
ABC transporter, permease protein.
 
 0.907
BAV1191
ABC transporter permease protein.
 
 0.892
BAV0925
ABC transporter, substrate-binding protein.
 
 
 0.870
BAV1923
ABC transporter, substrate-binding protein.
 
 
 0.852
BAV1193
ABC transporter, periplasmic binding protein.
 
 
 0.848
potH
Putrescine ABC transporter, permease protein.
 
 
 0.797
potI
Putrescine ABC transporter, permease protein.
 
 
 0.762
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.