STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BAV0121Putative filamentous surface protein; Similar to the N-terminus of fhaS in B. bronchiseptica. (580 aa)    
Predicted Functional Partners:
fhaC
Hemolysin activator protein; A related gene, hagA (BAVXXX) may function to export the B. avium hemagglutinin, HagB; an additional pair of fhaBC/hagAB genes occurs at BAVXXX.
 
 0.979
sphB1
Autotransporter serine protease (pseudogene); Unassigned protein domain.
  
 
 0.921
BAV0850
Putative membrane protein.
  
     0.571
wlbJK
Putative membrane protein.
  
  
 0.512
BAV0120
Putative carbon monoxide dehydrogenase subunit G.
       0.508
fhaD
Fimbrial chaperone protein.
  
  
 0.500
BAV2426
Putative exported protein.
  
     0.479
BAV0119
Putative transporter.
       0.448
BAV0118
Putative membrane protein.
       0.442
BAV1777
One of 11 fimbrial subunits.
  
    0.432
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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