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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0122Putative O-antigen polymerase. (420 aa)    
Predicted Functional Partners:
waaC
Lipopolysaccharide heptosyltransferase-1.
  
 
 0.958
waaA
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.937
waaF
ADP-heptose--LPS heptosyltransferase II.
 
 
 0.933
BAV2018
Putative glycosyl transferase.
  
 
 0.928
waaG
Lipopolysaccharide core biosynthesis glycosyl protein; Also similar to BAV2238 (27.027 38d.).
  
 
 0.915
BAV2636
Capsular polysaccharide biosynthesis glucosyltransferase.
  
  
 0.900
BAV2290
Putative pilus assembly protein; No significant database matches.
  
     0.664
xanB
Capsular polysaccharide biosynthesis protein [includes: mannose-6-phosphate isomerase and mannose-1-phosphate guanylyl transferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.653
BAV2669
Putative exported protein.
  
     0.612
BAV0900
Putative adhesin; Start codon not provided.
 
    0.600
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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