STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0130Putative membrane protein. (377 aa)    
Predicted Functional Partners:
BAV0131
Probable ATP-binding component of ABC transporter.
 
 0.997
BAV0132
Putative exported protein.
 
 0.996
BAV3304
ABC transporter, ATP-binding protein.
 
 0.984
vpsC
Putative virulence protein transporter.
 
 0.983
BAV3305
Putative membrane protein.
  
  
 
0.921
BAV0133
Putative exported protein.
 
  
 0.915
BAV3308
Putative exported protein.
  
 
 0.866
BAV0134
Conserved hypothetical protein.
       0.678
birA
BirA bifunctional protein [includes: biotin operon repressor; biotin--[acetyl-CoA-carboxylase] synthetase.
       0.565
baf
Bvg accessory factor; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis; Belongs to the type III pantothenate kinase family.
       0.563
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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