BAV0132 protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAV0132

Putative exported protein. (308 aa)

Predicted Functional Partners:

BAV0130

0.996

BAV0131

0.996

BAV0133

0.980

BAV3308

0.946

BAV3305

0.937

BAV3304

0.924

vpsC

0.900

BAV0134

0.719

birA

0.578

baf

0.577

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV0130	BAV0131	BAV0130	BAV0131	Putative membrane protein.	Probable ATP-binding component of ABC transporter.	0.997
BAV0130	BAV0132	BAV0130	BAV0132	Putative membrane protein.	Putative exported protein.	0.996
BAV0130	BAV0133	BAV0130	BAV0133	Putative membrane protein.	Putative exported protein.	0.915
BAV0130	BAV0134	BAV0130	BAV0134	Putative membrane protein.	Conserved hypothetical protein.	0.678
BAV0130	BAV3304	BAV0130	BAV3304	Putative membrane protein.	ABC transporter, ATP-binding protein.	0.984
BAV0130	BAV3305	BAV0130	BAV3305	Putative membrane protein.	Putative membrane protein.	0.921
BAV0130	BAV3308	BAV0130	BAV3308	Putative membrane protein.	Putative exported protein.	0.866
BAV0130	baf	BAV0130	BAV0128	Putative membrane protein.	Bvg accessory factor; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis; Belongs to the type III pantothenate kinase family.	0.563
BAV0130	birA	BAV0130	BAV0129	Putative membrane protein.	BirA bifunctional protein [includes: biotin operon repressor; biotin--[acetyl-CoA-carboxylase] synthetase.	0.565
BAV0130	vpsC	BAV0130	BAV3306	Putative membrane protein.	Putative virulence protein transporter.	0.983
BAV0131	BAV0130	BAV0131	BAV0130	Probable ATP-binding component of ABC transporter.	Putative membrane protein.	0.997
BAV0131	BAV0132	BAV0131	BAV0132	Probable ATP-binding component of ABC transporter.	Putative exported protein.	0.996
BAV0131	BAV0133	BAV0131	BAV0133	Probable ATP-binding component of ABC transporter.	Putative exported protein.	0.914
BAV0131	BAV0134	BAV0131	BAV0134	Probable ATP-binding component of ABC transporter.	Conserved hypothetical protein.	0.719
BAV0131	BAV3304	BAV0131	BAV3304	Probable ATP-binding component of ABC transporter.	ABC transporter, ATP-binding protein.	0.914
BAV0131	BAV3305	BAV0131	BAV3305	Probable ATP-binding component of ABC transporter.	Putative membrane protein.	0.982
BAV0131	BAV3308	BAV0131	BAV3308	Probable ATP-binding component of ABC transporter.	Putative exported protein.	0.851
BAV0131	baf	BAV0131	BAV0128	Probable ATP-binding component of ABC transporter.	Bvg accessory factor; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis; Belongs to the type III pantothenate kinase family.	0.580
BAV0131	birA	BAV0131	BAV0129	Probable ATP-binding component of ABC transporter.	BirA bifunctional protein [includes: biotin operon repressor; biotin--[acetyl-CoA-carboxylase] synthetase.	0.582
BAV0131	vpsC	BAV0131	BAV3306	Probable ATP-binding component of ABC transporter.	Putative virulence protein transporter.	0.966