STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fur-2Putative cation uptake regulatory protein; Belongs to the Fur family. (163 aa)    
Predicted Functional Partners:
BAV0148
Putative cation ABC transporter, membrane protein.
 
  
 0.784
BAV0147
Putative cation ABC transporter, ATP-binding protein.
  
  
 0.752
BAV0149
Putative cation ABC transporter,substrate-binding protein; Start codon not provided; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.712
BAV0150
Conserved hypothetical protein; Start codon not provided.
     
 0.580
BAV0151
Putative high-affinity nickel-transport protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
     
 0.580
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.559
BAV0145
Conserved hypothetical protein.
  
  
 0.518
BAV0152
TonB-dependent receptor protein.
     
 0.513
gltB
Glutamate synthase [NADPH] large chain precursor.
     
 0.494
actP
Copper-transporting P-type ATPase.
     
 0.482
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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