STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0147Putative cation ABC transporter, ATP-binding protein. (237 aa)    
Predicted Functional Partners:
BAV0148
Putative cation ABC transporter, membrane protein.
 
 
 0.999
BAV0149
Putative cation ABC transporter,substrate-binding protein; Start codon not provided; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.997
BAV0151
Putative high-affinity nickel-transport protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
 
   
 0.843
BAV0150
Conserved hypothetical protein; Start codon not provided.
 
   
 0.842
fur-2
Putative cation uptake regulatory protein; Belongs to the Fur family.
  
  
 0.751
BAV0152
TonB-dependent receptor protein.
  
  
 0.587
actP
Copper-transporting P-type ATPase.
     
 0.525
wlbJK
Putative membrane protein.
     
 0.524
hemF
Coproporphyrinogen III oxidase, aerobic; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
     
 0.501
fur
Ferric ion uptake regulator; Belongs to the Fur family.
  
  
 0.465
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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