STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0149Putative cation ABC transporter,substrate-binding protein; Start codon not provided; Belongs to the bacterial solute-binding protein 9 family. (310 aa)    
Predicted Functional Partners:
BAV0148
Putative cation ABC transporter, membrane protein.
  
 0.999
BAV0147
Putative cation ABC transporter, ATP-binding protein.
 
  
 0.997
BAV0150
Conserved hypothetical protein; Start codon not provided.
 
     0.845
BAV0151
Putative high-affinity nickel-transport protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
 
     0.845
BAV0145
Conserved hypothetical protein.
  
  
 0.675
fur-2
Putative cation uptake regulatory protein; Belongs to the Fur family.
 
  
 0.668
rpsN
30S ribosomal protein S14; Start codon not provided.
  
  
 0.628
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.615
purL
Phosphoribosylformylglycinamidine synthase; Start codon not provided; In the N-terminal section; belongs to the FGAMS family.
     
 0.581
BAV0628
Conserved hypothetical protein.
  
  
 0.571
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.