STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaKPhenylacetate-coenzyme A ligase. (421 aa)    
Predicted Functional Partners:
BAV0182
Putative high-affinity branched-chain amino acid ABC transporter, ATP-binding protein.
 
    0.958
BAV0183
Putative branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein.
 
    0.950
paaI
Phenylacetic acid degradation protein.
 
 
 0.936
paaK-2
Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
  
  
0.926
paaA
Phenylacetic acid degradation protein.
  
 
 0.923
paaE
Probable phenylacetic acid degradation NADH oxidoreductase.
  
 
 0.921
paaB
Phenylacetic acid degradation protein.
  
 
 0.919
paaC
Phenylacetic acid degradation protein.
  
 
 0.919
paaD
Phenylacetic acid degradation protein; Start codon not provided.
    
 0.916
BAV0184
Putative branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
    0.908
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.