STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
paaKPhenylacetate-coenzyme A ligase. (421 aa)    
Predicted Functional Partners:
BAV0182
Putative high-affinity branched-chain amino acid ABC transporter, ATP-binding protein.
 
    0.952
BAV0183
Putative branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein.
 
    0.952
BAV0184
Putative branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
    0.907
BAV0187
Putative AMP-binding enzyme; Start codon not provided.
 
    0.896
BAV0185
Putative branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.889
BAV0186
Putative high-affinity branched-chain amino acid transporter, ATP-binding protein.
 
    0.883
BAV2981
Putative oxidoreductase; Also similar to BAV3062 (48.1 38d.).
 
  
 0.593
BAV3062
Putative oxidoreductase; Also similar to BAV2981 (48.1 38d.).
 
  
 0.590
BAV0180
Metallo-beta-lactamase superfamily protein.
       0.575
BAV0188
Cyclic nucleotide-binding regulatory protein.
 
     0.467
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.