STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0187Putative AMP-binding enzyme; Start codon not provided. (654 aa)    
Predicted Functional Partners:
BAV0186
Putative high-affinity branched-chain amino acid transporter, ATP-binding protein.
 
    0.971
BAV0185
Putative branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
    0.955
BAV0184
Putative branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
    0.946
BAV0183
Putative branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein.
 
    0.919
fadD
long-chain-fatty-acid--CoA ligase.
  
 
0.915
paaK
Phenylacetate-coenzyme A ligase.
 
    0.896
BAV0182
Putative high-affinity branched-chain amino acid ABC transporter, ATP-binding protein.
 
    0.896
BAV0188
Cyclic nucleotide-binding regulatory protein.
 
  
 0.723
rplE
50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.485
rplR
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
    
 
 0.478
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.