STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV0188Cyclic nucleotide-binding regulatory protein. (232 aa)    
Predicted Functional Partners:
BAV1276
Crp-family transcriptional regulator.
  
  
  0.918
wlbJK
Putative membrane protein.
  
 
 0.762
BAV0187
Putative AMP-binding enzyme; Start codon not provided.
 
  
 0.723
BAV1825
Conserved hypothetical protein.
    
 0.606
rpoB
DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.579
BAV0186
Putative high-affinity branched-chain amino acid transporter, ATP-binding protein.
       0.574
BAV0183
Putative branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein.
 
     0.573
rpoC
DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.572
BAV0185
Putative branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
     0.561
bvgS
Virulence sensor protein; Start codon not provided.
  
 
 0.560
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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