STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0211IclR-family transcriptional regulator. (256 aa)    
Predicted Functional Partners:
BAV0210
Conserved hypothetical protein.
  
    0.776
BAV0894
IclR-family transcriptional regulator.
  
     0.750
BAV2756
IclR-family transcriptional regulator.
  
     0.730
BAV0567
IclR-family transcriptional regulator.
  
     0.721
BAV0041
IclR-family transcriptional regulator; Start codon not provided.
  
     0.673
BAV0212
Probable short chain dehydrogenase/reductase.
  
    0.501
kipI
Histidine kinase inhibitor; Also similar to BAV3298 (28.6 38d).
  
    0.430
BAV3298
Conserved hypothetical protein; Also similar to BAV3096 (28.6 38d).
  
    0.430
BAV0213
Putative exported protein.
       0.415
BAV0216
Putative 3-hydroxybutyryl-CoA dehydrogenase.
  
    0.414
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.