STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV0224Probable short-chain dehydrogenase/reductase; Start codon not provided. (232 aa)    
Predicted Functional Partners:
BAV0223
Conserved hypothetical protein.
 
    0.787
BAV0040
Probable short-chain dehydrogenase/reductase.
 
     0.771
BAV0222
Putative fatty acid CoA ligase.
  
 
 0.752
BAV0221
GntR-family transcriptional regulator.
       0.720
bdhA
Putative D-beta-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.592
BAV0226
acyl-CoA dehydrogenase.
  
  0.578
BAV1954
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.533
wlbJK
Putative membrane protein.
    
 
 0.488
BAV0225
Putative exported protein.
       0.481
fabD
Malonyl CoA-acyl carrier protein transacylase.
 
 0.472
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.